Journals

2018

  • [DOI] L. Correa, B. Borguesan, C. Farfan, M. Inostroza-Ponta, and M. Dorn, “A memetic algorithm for 3d protein structure prediction problem,” Ieee/acm transactions on computational biology and bioinformatics, vol. 15, iss. 3, pp. 690-704, 2018.
    [Bibtex]
    @ARTICLE{Correa2018690,
    author={Correa, L. and Borguesan, B. and Farfan, C. and Inostroza-Ponta, M. and Dorn, M.},
    title={A memetic algorithm for 3D protein structure prediction problem},
    journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
    year={2018},
    volume={15},
    number={3},
    pages={690-704},
    doi={10.1109/TCBB.2016.2635143},
    note={cited By 0},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85048340079&doi=10.1109%2fTCBB.2016.2635143&partnerID=40&md5=602a65c1c31174fce80f68d183507510},
    document_type={Article},
    source={Scopus},
    }
  • [DOI] J. Parraga-Alava, M. Dorn, and M. Inostroza-Ponta, “A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies,” Biodata mining, vol. 11, iss. 1, 2018.
    [Bibtex]
    @ARTICLE{Parraga-Alava2018,
    author={Parraga-Alava, J. and Dorn, M. and Inostroza-Ponta, M.},
    title={A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies},
    journal={BioData Mining},
    year={2018},
    volume={11},
    number={1},
    doi={10.1186/s13040-018-0178-4},
    art_number={16},
    note={cited By 0},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85051164540&doi=10.1186%2fs13040-018-0178-4&partnerID=40&md5=df16dd26628069cc7ce572c35dc43e8b},
    document_type={Article},
    source={Scopus},
    }

2017

  • [DOI] C. Warren, M. Inostroza-Ponta, and P. Moscato, “Using the qap grid visualization approach for biomarker identification of cell-specific transcriptomic signatures,” Methods in molecular biology, vol. 1526, pp. 271-297, 2017.
    [Bibtex]
    @ARTICLE{Warren2017271,
    author={Warren, C. and Inostroza-Ponta, M. and Moscato, P.},
    title={Using the QAP grid visualization approach for biomarker identification of cell-specific transcriptomic signatures},
    journal={Methods in Molecular Biology},
    year={2017},
    volume={1526},
    pages={271-297},
    doi={10.1007/978-1-4939-6613-4_16},
    note={cited By 1},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85000866085&doi=10.1007%2f978-1-4939-6613-4_16&partnerID=40&md5=bee328e13dde69e372767cfc55e9c312},
    document_type={Book Chapter},
    source={Scopus},
    }
  • [DOI] B. Borguesan, M. Inostroza-Ponta, and M. Dorn, “Nias-server: neighbors influence of amino acids and secondary structures in proteins,” Journal of computational biology, vol. 24, iss. 3, pp. 255-265, 2017.
    [Bibtex]
    @ARTICLE{Borguesan2017255,
    author={Borguesan, B. and Inostroza-Ponta, M. and Dorn, M.},
    title={NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins},
    journal={Journal of Computational Biology},
    year={2017},
    volume={24},
    number={3},
    pages={255-265},
    doi={10.1089/cmb.2016.0074},
    note={cited By 3},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-85014635621&doi=10.1089%2fcmb.2016.0074&partnerID=40&md5=4424497f19defbca062b87b022495116},
    document_type={Article},
    source={Scopus},
    }

2015

  • [DOI] B. Borguesan, M. B. E Silva, B. Grisci, M. Inostroza-Ponta, and M. Dorn, “Apl: an angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction,” Computational biology and chemistry, vol. 59, pp. 142-157, 2015.
    [Bibtex]
    @ARTICLE{Borguesan2015142,
    author={Borguesan, B. and E Silva, M.B. and Grisci, B. and Inostroza-Ponta, M. and Dorn, M.},
    title={APL: An angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction},
    journal={Computational Biology and Chemistry},
    year={2015},
    volume={59},
    pages={142-157},
    doi={10.1016/j.compbiolchem.2015.08.006},
    note={cited By 17},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84945282049&doi=10.1016%2fj.compbiolchem.2015.08.006&partnerID=40&md5=78df5055d6f7c2999921523cda1fac0e},
    document_type={Article},
    source={Scopus},
    }

2014

  • [DOI] M. Ramírez-Castrillón, S. D. C. Mendes, M. Inostroza-Ponta, and P. Valente, “(gtg)<inf>5</inf> msp-pcr fingerprinting as a technique for discrimination of wine associated yeasts?,” Plos one, vol. 9, iss. 8, 2014.
    [Bibtex]
    @ARTICLE{Ramírez-Castrillón2014,
    author={Ramírez-Castrillón, M. and Mendes, S.D.C. and Inostroza-Ponta, M. and Valente, P.},
    title={(GTG)<inf>5</inf> MSP-PCR fingerprinting as a technique for discrimination of wine associated yeasts?},
    journal={PLoS ONE},
    year={2014},
    volume={9},
    number={8},
    doi={10.1371/journal.pone.0105870},
    art_number={e105870},
    note={cited By 13},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84931586626&doi=10.1371%2fjournal.pone.0105870&partnerID=40&md5=86033925a3d34f99289032f0e7c13240},
    document_type={Article},
    source={Scopus},
    }

2012

  • [DOI] M. B. Clark, R. L. Johnston, M. Inostroza-Ponta, A. H. Fox, E. Fortini, P. Moscato, M. E. Dinger, and J. S. Mattick, “Genome-wide analysis of long noncoding rna stability,” Genome research, vol. 22, iss. 5, pp. 885-898, 2012.
    [Bibtex]
    @ARTICLE{Clark2012885,
    author={Clark, M.B. and Johnston, R.L. and Inostroza-Ponta, M. and Fox, A.H. and Fortini, E. and Moscato, P. and Dinger, M.E. and Mattick, J.S.},
    title={Genome-wide analysis of long noncoding RNA stability},
    journal={Genome Research},
    year={2012},
    volume={22},
    number={5},
    pages={885-898},
    doi={10.1101/gr.131037.111},
    note={cited By 224},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-84860581983&doi=10.1101%2fgr.131037.111&partnerID=40&md5=1d599316ed0a911159346b87c686442c},
    document_type={Article},
    source={Scopus},
    }

2011

  • [DOI] M. Inostroza-Ponta, R. Berretta, and P. Moscato, “Qapgrid: a two level qap-based approach for large- scale data analysis and visualization,” Plos one, vol. 6, iss. 1, 2011.
    [Bibtex]
    @ARTICLE{Inostroza-Ponta2011,
    author={Inostroza-Ponta, M. and Berretta, R. and Moscato, P.},
    title={QAPgrid: A two level QAP-based approach for large- scale data analysis and visualization},
    journal={PLoS ONE},
    year={2011},
    volume={6},
    number={1},
    doi={10.1371/journal.pone.0014468},
    art_number={e14468},
    note={cited By 17},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-79251570254&doi=10.1371%2fjournal.pone.0014468&partnerID=40&md5=8e4173ed34df3629d63b8fb8b4d77c8d},
    document_type={Article},
    source={Scopus},
    }
  • [DOI] A. S. Arefin, M. Inostroza-Ponta, L. Mathieson, R. Berretta, and P. Moscato, “Clustering nodes in large-scale biological networks using external memory algorithms,” Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics), vol. 7017 LNCS, iss. PART 2, pp. 375-386, 2011.
    [Bibtex]
    @ARTICLE{Arefin2011375,
    author={Arefin, A.S. and Inostroza-Ponta, M. and Mathieson, L. and Berretta, R. and Moscato, P.},
    title={Clustering nodes in large-scale biological networks using external memory algorithms},
    journal={Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)},
    year={2011},
    volume={7017 LNCS},
    number={PART 2},
    pages={375-386},
    doi={10.1007/978-3-642-24669-2_36},
    note={cited By 11},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-80455162373&doi=10.1007%2f978-3-642-24669-2_36&partnerID=40&md5=a17f0186511da9452a7b6c39f37ea170},
    document_type={Conference Paper},
    source={Scopus},
    }

2010

  • [DOI] C. Riveros, D. Mellor, K. S. Gandhi, F. C. Mckay, M. B. Cox, R. Berretta, S. Y. Vaezpour, M. Inostroza-Ponta, S. A. Broadley, R. N. Heard, S. Vucic, G. J. Stewart, D. W. Williams, R. J. Scott, J. Lechner-Scott, D. R. Booth, and P. Moscato, “A transcription factor map as revealed by a genome- wide gene expression analysis of whole-blood mrna transcriptome in multiple sclerosis,” Plos one, vol. 5, iss. 12, 2010.
    [Bibtex]
    @ARTICLE{Riveros2010,
    author={Riveros, C. and Mellor, D. and Gandhi, K.S. and Mckay, F.C. and Cox, M.B. and Berretta, R. and Vaezpour, S.Y. and Inostroza-Ponta, M. and Broadley, S.A. and Heard, R.N. and Vucic, S. and Stewart, G.J. and Williams, D.W. and Scott, R.J. and Lechner-Scott, J. and Booth, D.R. and Moscato, P.},
    title={A Transcription Factor Map as Revealed by a Genome- Wide Gene Expression Analysis of Whole-Blood mRNA Transcriptome in Multiple Sclerosis},
    journal={PLoS ONE},
    year={2010},
    volume={5},
    number={12},
    doi={10.1371/journal.pone.0014176},
    art_number={e14176},
    note={cited By 32},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-78649928621&doi=10.1371%2fjournal.pone.0014176&partnerID=40&md5=e65188ebd232702d42bd37d39b4b6535},
    document_type={Article},
    source={Scopus},
    }

2009

  • [DOI] A. Capp, M. Inostroza-Ponta, D. Bill, P. Moscato, C. Lai, D. Christie, D. Lamb, S. Turner, D. Joseph, J. Matthews, C. Atkinson, J. North, M. Poulsen, N. A. Spry, K. -H. Tai, C. Wynne, G. Duchesne, A. Steigler, and J. W. Denham, “Is there more than one proctitis syndrome? a revisitation using data from the trog 96.01 trial,” Radiotherapy and oncology, vol. 90, iss. 3, pp. 400-407, 2009.
    [Bibtex]
    @ARTICLE{Capp2009400,
    author={Capp, A. and Inostroza-Ponta, M. and Bill, D. and Moscato, P. and Lai, C. and Christie, D. and Lamb, D. and Turner, S. and Joseph, D. and Matthews, J. and Atkinson, C. and North, J. and Poulsen, M. and Spry, N.A. and Tai, K.-H. and Wynne, C. and Duchesne, G. and Steigler, A. and Denham, J.W.},
    title={Is there more than one proctitis syndrome? A revisitation using data from the TROG 96.01 trial},
    journal={Radiotherapy and Oncology},
    year={2009},
    volume={90},
    number={3},
    pages={400-407},
    doi={10.1016/j.radonc.2008.09.019},
    note={cited By 54},
    url={https://www.scopus.com/inward/record.uri?eid=2-s2.0-61349141208&doi=10.1016%2fj.radonc.2008.09.019&partnerID=40&md5=b7d6e58bad4ea2d2b545ac8d8af2b139},
    document_type={Article},
    source={Scopus},
    }

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